Site not displaying correctly in gh-pages

you have to do both - set the baseurl and then either use relative url or something else to prepend the baseurl on ALL your links, including css/js.

In your boilerplate layout you have:
<link rel="stylesheet" type="text/css" media="screen" href="./assets/style.css" />

that won’t work with baseurl.

you need to do what ckrus said above.

See also: